🚀 Installation Guide

Follow these steps to install and use the tool:

1. Install Ollama

curl -fsSL https://ollama.com/install.sh | sh

Download the installer from:
https://ollama.com/download

Create a fresh conda environment:

conda create -n llm_extractinator python=3.11
conda activate llm_extractinator

Install the package via pip:

pip install llm_extractinator

Or from source:

git clone https://github.com/DIAGNijmegen/llm_extractinator.git
cd llm_extractinator
pip install -e .

To be able to run the latest models available, make sure to update the ollama package to the latest version:

pip install --upgrade ollama langchain-ollama