Download Example Data

---

# !pip install gdown
import gdown
import sys
from pathlib import Path

from downloaddata import WSA_DOWNLOAD_LINK, WSA_NAME, WSI_DOWNLOAD_LINK, WSI_NAME, WSM_DOWNLOAD_LINK, WSM_NAME

def _download(output_folder, download_link, name):
    output_path = Path(output_folder) / name
    if not output_path.exists():
        gdown.download(download_link, str(output_path))
    
def download_example_data(output_folder=Path("/tmp/")):
    _download(output_folder, WSI_DOWNLOAD_LINK, WSI_NAME)
    _download(output_folder, WSA_DOWNLOAD_LINK, WSA_NAME)
    _download(output_folder, WSM_DOWNLOAD_LINK, WSM_NAME)

Download Segmentation Data

WSI_DOWNLOAD_LINK = "https://drive.google.com/uc?id=1a-77TNRlSoPbRlNI0VtlHG3d7xTSpcwB"
WSI_NAME = Path("TCGA-21-5784-01Z-00-DX1.tif")

WSA_DOWNLOAD_LINK = "https://drive.google.com/uc?id=1jkTp0IJHHpmLd1yDO1L3KRFJgm0STh0d"
WSA_NAME = Path("TCGA-21-5784-01Z-00-DX1.xml")

WSM_DOWNLOAD_LINK = "https://drive.google.com/uc?id=1nLdKzSLq79mon1RCevgEmG59E8Oq9JhZ"
WSM_NAME = Path("TCGA-21-5784-01Z-00-DX1_tb_mask.tif")

def download_segmentation_data(output_folder=Path("/tmp/")):
    _download(output_folder, WSI_DOWNLOAD_LINK, WSI_NAME)
    _download(output_folder, WSA_DOWNLOAD_LINK, WSA_NAME)
    _download(output_folder, WSM_DOWNLOAD_LINK, WSM_NAME)
    
download_segmentation_data()